This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
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Updated
Aug 4, 2018 - HTML
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R
Repository detailing a Nextflow pipeline to run mpileup variant callling on TF footprints.
Exploring Bioinformatics pipelines
Website for the Workflows Community of Practice at the Wellcome Genome Campus
Working through NextFlow tutorials. See https://github.com/nextflow-io/training
Using uncertainty in multiple sequence alignments for phylogenetic trees and bootstrap support values
A demo workflow showing download, extraction, and compression of sequences from SRA.
This repository will soon be archived, to merge contribution with https://github.com/carpentries-incubator/workflows-nextflow
Excel report from bioinformatics analysis of viral seq data with nf-core/viralrecon and other Nextflow workflows
Nextflow workflow for basic HiC data processing
Nextflow Tutorial - Variant Calling Edition
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
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