WIP & POC: Count Viral and other non-human genome signatures in Human NGS data
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Updated
Aug 15, 2017 - Shell
WIP & POC: Count Viral and other non-human genome signatures in Human NGS data
A fast, easy way to present complex bioinformatics pipelines to biologists
Honours project, 2019
16S Microbiome Analysis Pipeline. This version written in Nextflow.
Nextflow script for processing WGS data
A tool for running bioinformatics workflows on a Kubernetes cluster
A Nextflow variant normalization pipeline based on vt and bcftools
GitHub Action to launch a workflow using Nextflow Tower.
GitHub Action to run nf-core code linting on a Nextflow pipeline
Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
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