A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

Read and write TIFF files

Python tool to parse Tomocube TCF files to OME-TIFF format

Tools to handle IMC data

Feature based image registration for immunofluorescence images

Supplementary information associated with Besson et al. (2019) ECDP 2019