Phylogenetic orthology inference for comparative genomics
-
Updated
Jun 1, 2024 - Python
Phylogenetic orthology inference for comparative genomics
A high performance tool to identify orthologs and paralogs across genomes.
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
Feature-aware Directed OrtholoG search
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
GUI tool to add rich annotations to PAW summary files from Swiss-Prot flat text files.
A small pipeline to extract homologs from Homologene
ortho2align is a lncRNA ortholog discovery CLI tool based on syntenic regions and statistical assessment of alignment nonrandomness.
Scripts used to help facilitate the construction of a binary protein interaction network
PhyProbe is a bioinformatic pipeline designed to extract phylogenetic loci from Next-Generation Sequencing datasets including RNAseq, WGS, and Sequence/Target Capture methodologies (e.g., AHE, UCEs).
Ortholog/homolog mapping for Geneweaver
Mapping RefSeq RNA to OrthoDB (Under Development)
Add a description, image, and links to the orthologs topic page so that developers can more easily learn about it.
To associate your repository with the orthologs topic, visit your repo's landing page and select "manage topics."