Structural variation caller using third generation sequencing
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Updated
May 6, 2024 - Python
Structural variation caller using third generation sequencing
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Technology agnostic long read analysis pipeline for transcriptomes
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Long-reads Gap-free Chromosome-scale Assembler
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
ClairS - a deep-learning method for long-read somatic small variant calling
Predict plasmids from uncorrected long read data
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
simplified cellranger for long-read data
Coronavirus (SARS-Cov-2) sequencing analysis
Quality control plotting for long reads
Improving long-read barcode-variant mapping using multiple sequence alignment.
SARS-CoV-2 analysis using PacBio long reads
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