Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
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Updated
Dec 4, 2018 - Python
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Predict plasmids from uncorrected long read data
Assembling the cause of phenotypes and genotypes from NGS data
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
de novo virus assembler of Illumina paired reads
Python3 scripts to manipulate FASTA and FASTQ files
CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.
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An alignment-independent tool for the study of pathogen sequence diversity
Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
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Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
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