Repository for the GA4GH phenopacket schema
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Updated
May 23, 2024 - Java
Repository for the GA4GH phenopacket schema
A Tool to Annotate and Prioritize Exome Variants
phenol: Phenotype ontology library
The QC software for the OWL version of HPO (only text-checks, not so much logic included)
Runs CQL phenotype definitions against an OMOP repository
A phenotype-based tool for variant prioritization in WES and WGS data
Broker: simulates a server that receives the digital phenotypes built by the OpenDPMH framework.
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized using common, reusable programming components.
How do proliferation-migration tradeoffs affect phenotypic evolution in a tumors? In this off-lattice agent-based simulation the user can vary trade-off boundaries, death rate, and whether death occurs in response to demographic or environmental stochasticity. See the README file for details.
The QC software for the OBO version of HPO
Germinate Gatekeeper
Code to generate ontology annotated objects (e.g. HPO annotated patients)
Bayesian ontology querying from Bauer et al.
Reference java implementation for phenopackets
🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
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