Plague Global Phylogeny Manuscript
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Updated
Jun 17, 2021 - HTML
Plague Global Phylogeny Manuscript
Supporting code for a study on the phylogeography of the common garter snake Thamnophis sirtalis
Scripts in R for analyses of Isolation by Resistance (IBR) - PART 3 in LANDSCAPE GENOMICS PIPELINE
LineageHomology uses phylogenies with reconstructed ancestral states to define groups of phylogenetic tips that have gained their states through homologous inheritance or de novo acquisition. LineageHomology can be applied to pathogen phylogeography to define transmission lineages and singletons and derive simple estimates of importation and loc…
This is the repository for the project "Evaluating species origins within tropical sky-islands arthropod communities"
Phylogeographic text-mining platform
Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan
An Integrated Phylogeographic Analysis of the Bantu Migration
Tracking the spread of Foot-and-Mouth Disease virus in South America
Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
Genomic Epidemiology of SARS-CoV-2 in Pakistan
Phylogeographical analyses of SARS-CoV-2 variants of concern in Norway
Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree
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