Bacterial plasmid annotation pipeline
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Updated
Mar 21, 2024 - Python
Bacterial plasmid annotation pipeline
A Python based server for making Gibson cloning a little faster
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
A simple python plasmid map creator
An unofficial API for Addgene, the open-source plasmid repository.
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
Modular cloning simulation with the MoClo framework in Python
a DNA assembly library
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Software for prediction of plasmid sequences in metagenomic assemblies
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
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