A collection of Galaxy-related training material
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Updated
Sep 17, 2024 - HTML
A collection of Galaxy-related training material
Various teaching material
A modular, python-based framework for mass spectrometry. Powered by nbdev.
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
The repo for LFQ-Analyst
A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
Github repository for nanoSPLITS manuscript data and R scripts
Computational biology/bioinformatics workflows, codes, and concept notes on NGS data
Toolbox for Studying Bacteria, Archaea, and Complex Taxons
Sequence Logo - relative style is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript.
Joint UMAP embedding and clustering of proteomic and transcriptomic data
Deep-neural protein translation
Self-sequence alignment represents a novel mathematical model for measuring the information content in biological sequences, such as DNA, RNA, or proteins. Nevertheless, the use of this model is not limited to biological sequences. Thus, any symbol inside a sequence can be considered.
Re-analysis of data from childhood acute lymphoblastic leukemia study in Nat. Comm. April 2019
Interactive BigData Application for Proteomics data.
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