Manipulate and mine Relion .star files

Image-processing software for cryo-electron microscopy

Some scripts to facilitate subtomogram-averaging workflows.

Subtomogram Averaging using Dynamo, imod, Relion and MatLab

Python scripts for Relion external job type

Sbatch scripts for submitting cryo-EM jobs on Stanford's Sherlock compute cluster.

Split relion star files by tomogram or Warp directory.

A tool reading IMOD points, obtaining particles' info and generating .star file for RELION

A tool converting DYNAMO table files(.tbl) to RELION star files(.star)

Software to divide data collected using Leginon into optics groups according to image shift

A lightweight script to monitor RELION jobs and send information over Slack DMs

example set up for Relion on AWS ParallelCluster for CryoEM

Plot the histogram of local resolution values of a cryo-EM reconstruction

Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles

Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION

Report the number of particles in each class from a run_data.star file produced by RELION

Utilities to help cryoEM data analysis

RelionReport is a tool which generates a report and animation from a given relion 3DClass, Refine3D or InitialModel job. RelionReport aims to give more meaningful output from relion jobs to aid in making processing decisions and presenting processing data.

helper scripts for Electron microscopy data processing

A suite of Odd-Job scripts for cryo-em data processing.