rna-seq
Here are 280 public repositories matching this topic...
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
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May 7, 2024 - Python
minimal example implementations for bioinformatics workflow managers
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Oct 27, 2021 - Python
RNA velocity estimation in Python
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Aug 14, 2023 - Python
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
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Feb 5, 2024 - Python
Finder of Somatic Fusion Genes in RNA-seq data
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Apr 14, 2023 - Python
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
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May 3, 2024 - Python
Identification of differential RNA modifications from nanopore direct RNA sequencing
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Apr 29, 2024 - Python
RNA sequencing analysis software
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May 8, 2024 - Python
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
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May 9, 2024 - Python
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
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Feb 7, 2023 - Python
Publication quality NGS track plotting
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Jun 27, 2022 - Python
🐍 Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
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Jul 18, 2017 - Python
A tool to identify, orient, trim and rescue full length cDNA reads
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Jul 4, 2022 - Python
A versatile sequenced read processor for nanopore direct RNA sequencing
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May 24, 2020 - Python
A repository for sharing information on available COVID-19 RNA-Seq datasets
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Mar 14, 2022 - Python
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
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Jun 4, 2021 - Python
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
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Dec 11, 2023 - Python
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