Single-cell analysis in Python. Scales to >1M cells.
Deep probabilistic analysis of single-cell and spatial omics data
Annotated data.
Electronic Health Record Analysis with Python.
muon is a multimodal omics Python framework
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
Perturbation Analysis in the scverse ecosystem.
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
Multimodal Data (.h5mu) implementation for Python
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.
anndata with trees
scverse lineage tracing analysis toolkit
Add a description, image, and links to the scverse topic page so that developers can more easily learn about it.
To associate your repository with the scverse topic, visit your repo's landing page and select "manage topics."