Principal Component Analysis, PCA, Gaussian Markov Random Fields, Graphical model,
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Updated
Mar 24, 2018 - R
Principal Component Analysis, PCA, Gaussian Markov Random Fields, Graphical model,
Scripts and config files for assembly and SNP design of genomics of Polynesian rats
Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.
R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays
DNA Imputation tool for Generis.
Scripts and data associated with "Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod"
This repository contains a workflow to perform genome-environment association analysis with redundancy analysis.
🍸R version of SConES, a systems-biology approach to GWAS.
A QC pipeline for SVs calls based on coverage and SNP calls
An R package for detecting copy number variants from SNPs data
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
An Efficient Swiss Army Knife for Population Genomic Analyses in R
🔖 Get SNP proxies from the 1000 Genomes Project.
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
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