Quickly search, compare, and analyze genomic and metagenomic data sets.
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Updated
Jun 26, 2024 - Python
Quickly search, compare, and analyze genomic and metagenomic data sets.
fast, multithreaded sourmash operations: search, compare, and gather.
A database for signatures of public genomic sources
Find disease associations across metagenomes with k-mers using sourmash, and then recover pangenomic accessory elements using spacegraphcats.
Tools and workflows for evaluating bacterial and archaeal genome contamination with sourmash and GTDB.
Scripts that are useful for sourmash, but not necessarily part of the base command line.
sourmash plugin to filter hashes/k-mers by presence across many sketches
Remove contaminated contigs from genomes using k-mers and taxonomies.
Explore microbial contamination in human whole-genome shotgun data sets, using sourmash
Project template for sourmash-based characterization of genomes and metagenomes
Use sourmash to sketch the human genome (hg38), incl all unmapped chromosomes.
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