Package for fetching metadata and downloading data from SRA/ENA/GEO
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Updated
Sep 17, 2023 - Python
Package for fetching metadata and downloading data from SRA/ENA/GEO
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Builds a PEP from SRA or GEO accessions
Work on and around an interactive metadata table for project identification
Sequence Read Archive Classification
Pipeline for RNA-seq analysis
MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
Python wrapper created to help download metagenomic data from SRA or ENA databases
Up-to-date SRA growth size visualization
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