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transcriptomics

Here are 11 public repositories matching this topic...

markziemann / dee2

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

data-mining bioinformatics rna-seq genomics genetics transcriptomics rna-expression

Updated Aug 26, 2023
Shell

jananiravi / compbio-gists

Computational Biology & Bioinformatics Resources

shell data-science bioinformatics r computational-biology comparative-genomics gists molecular-evolution transcriptomics phylogeny

Updated Mar 20, 2023
Shell

Kuanhao-Chao / Transcript_Quantifier_Assessment

🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.

rna-seq assembly gtex transcriptomics read-simulation transcript-quantification transcript-assembly transcript-noise

Updated May 1, 2022
Shell

gibbslab / biobash

Common BASH routines for computational biology

bash bioinformatics transcriptomics bioinformatics-analysis bioinformatics-scripts bash-scripting genomic-data-analysis bioinformatics-tool

Updated May 23, 2022
Shell

weylz / captureTCNE

A tailored identification framework to depict the landscape of transcribed conserved non-coding elements (TCNEs)

transcriptomics identification-framework genomic-regulatory-elements

Updated May 9, 2024
Shell

neocruiser / pipelines

Machine learning and bioinformatic workflows for gene discovery.

python bash machine-learning automation bioinformatics rna-seq r deep-learning genomics pipelines transcriptomics pbs-torque

Updated Aug 9, 2019
Shell

Shuhua-Group / SVanalysis_STARProtocols

A protocol for applying low-coverage whole-genome sequencing data in structure variation studies

population-genetics transcriptomics structure-variation

Updated Feb 28, 2024
Shell

kashiff007 / RNA-seq-Pipeline-Under-Construction-

Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.

bash bioinformatics rna-seq pipeline genomics mapping next-generation-sequencing snp variant-calling transcriptomics illumina fastq reads differential-gene-expression fastqc

Updated May 26, 2019
Shell

C-gonz / Mayfly_transcriptomics

Data and scripts associated with H. limbata 2014 1st instar transcriptome

mayfly transcriptomics illumina insects ephemeroptera

Updated May 27, 2020
Shell

FranciscoAscue / Transcriptomica_RNAseq

Repositorio para curso Transcriptomica

r bash-script transcriptomics

Updated May 27, 2023
Shell

YogiOnBioinformatics / Teaching-Assistant-Computational-Genomics

Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.

bash unix bioinformatics rna-seq r university computational-biology genome-annotation chip-seq transcriptomics genome-browser differential-gene-expression teaching-assistant genome-alignment motif-finding computational-genomics deeptools

Updated Mar 18, 2019
Shell

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