Hierarchical, iterative clustering for analysis of transcriptomics data in R
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Updated
May 31, 2024 - HTML
Hierarchical, iterative clustering for analysis of transcriptomics data in R
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…
An R package to plot interactive three-way differential expression analysis
OmicsSuite website for releasing new version.
spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Materials used during #NGSchool2017
A comprehensive analysis tool for Ribo-seq and small RNA-seq data
ImaGene: A multi-omic ML/AI software with guided operational reports and supporting files
Ontogenetic shifts in symbiotic and metabolic state in coral early life history
Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."
Deep-neural protein translation
Joint UMAP embedding and clustering of proteomic and transcriptomic data
Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining
Review on 'Reconciling Multiple Connectivity Scores for Drug Repurposing.'
Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish
Visium SPG AD project (n = 10) using Visium Spatial Proteogenomics (Visium-SPG) on dissections from the inferior temporal cortex (ITC) from Alzheimer's disease cases and controls.
Repository for course project in Bioinformatics Institute 2023-2024
Code used for data analysis of drug repurposing approach to target inflammation in atherosclerosis
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