CLI tool for bioinformatic in-depth exploration of small RNA-seq data

TE annotation pipeline and analysis scripts for the insect mobilome publication by Petersen et al.

Transposable Element Finder - Detection of active transposable elements from NGS data

Nextflow workflow for automatic repeat detection, classification and masking

Transposon Insertion Finder - Detection of new TE insertions in NGS data

Genotyping of segregating mobile elements insertions

starfish: a modular toolkit for giant mobile element annotation

A tool for discovering transposable elements and describing patterns of genome evolution

A toolkit for annotation of transposable element families from unassembled sequence reads

Extensive de-novo TE Annotator