Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Updated
Jul 11, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
GATK RNA-Seq Variant Calling in Nextflow
Assembly and intrahost/low-frequency variant calling for viral samples
Call and score variants from WGS/WES of rare disease patients.
Variant Calling Pipeline Using GATK4 and Nextflow
Please consider using/contributing to https://github.com/nf-core/sarek
Please consider using/contributing to https://github.com/nf-core/sarek
Assembly and intrahost / low-frequency variant calling for viral samples
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
Flujos de trabajos desarrollados y automatizados en el Inmegen para el procesamiento de datos genómicos y transcriptómicos.
a better freebayes-parallel
A nextflow variant benchmarking pipeline - premature
Nextflow pipeline for plasmodium SNP calling
A tool suite for a simple, streamlined and rapid evaluation of variant callsets
Strelka2 nextflow pipeline
Pipeline for SNP Calling Created in Nextflow management system for purposesof testing the advantages of managed systems vs native applications in variant calling. The paper created and published one day is titled "NextFlow vs. plain Bash: Different Approaches to the Parallelisation of SNP Calling from the Whole Genome Sequence Data"
Perform read mapping and variant calling using snippy
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