hmmcluster - Hidden Markov Model clustering of nucleotide sequences. O Charles & R Goldstein.
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Updated
Dec 7, 2023 - Java
hmmcluster - Hidden Markov Model clustering of nucleotide sequences. O Charles & R Goldstein.
Dr. Buqing Yi
Database of herpesvirus antiviral resistance mutations
Drug Resistance Genotyping of antiviral treated Herpesviruses
Code and data used in Mollentze et al. (2022) "Variation in the ACE2 receptor has limited utility for SARS-CoV-2 host prediction".
Code of the article that describes the molecular epidemiology analyses of OsHV-1 virus by whole genome sequencing approaches in French shellfish growing areas.
Repository for animal tracking project TRKIR
An organised catalog of endogenous viral element (EVE) sequences identified via database-integrated genome screening (DIGS).
A web tool for recombination events analysis in viral genomes. Django based version of recan
🎧 Papers discussed on various shows on MicrobeTV
Primer Bookdown de Virología en Español
Data and code related to the Janies Lab Variant Dashboard for SARS-CoV-2
Imputing the mammalian virome with the LF-SVD model
These are scripts relevant to the study of sapovirus intrahost and interhost genome evolution. The scripts are relevant to (1) the mining of inter-genotype evolution, (2) within and between-host sapovirus genome evolutionary analyses, (3) sapovirus genetic divergence and diversity.
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
SARS-CoV-2 Peptide Vaccine, Gen 11
Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)
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