A collection of reusable WDL tasks. Category:Other

A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

A BioWDL workflow for gathering metrics from a BAM file. Category:Single-Sample

bioinformatics pipelines

WDL tasks for commonly used BFX tools

cwl/wdl/sm/nf files, tool and workflow metadata, and input specifications.

Workflow for metagenome assembly

Broad fungal method repository

Working space for creating dockstore training materials

Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.

A BioWDL workflow for quantifying expression. Category:Multi-Sample

MobidicWDL workflows

Wraps up some SRA-related utilities

A BioWDL pipeline for virus assembly.

A collection of BioWDL workflows for aligning sequencing data.

WDLized Cell Ranger GEX

A collection of tasks wrapped in WDL

Example Repository for setting up GitHub Actions for WDL and CWL workflows for CI/CD