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codecov bot commented Sep 10, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 93.27%. Comparing base (fc6ffec) to head (7c4d15c).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1044      +/-   ##
==========================================
- Coverage   93.30%   93.27%   -0.03%     
==========================================
  Files          18       18              
  Lines        6540     6545       +5     
  Branches     1117     1117              
==========================================
+ Hits         6102     6105       +3     
- Misses        297      299       +2     
  Partials      141      141              
Flag Coverage Δ
C 93.27% <ø> (-0.03%) ⬇️
python 95.58% <ø> (-0.04%) ⬇️

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@benjeffery benjeffery force-pushed the drop-python-39-support branch 3 times, most recently from 466c372 to 9405837 Compare September 10, 2025 09:38
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cyvcf2 doesn't have wheels for 3.13 yet. Have raised a PR brentp/cyvcf2#317

@benjeffery benjeffery force-pushed the drop-python-39-support branch 2 times, most recently from ece1b43 to 4b5f048 Compare October 1, 2025 16:47
@benjeffery benjeffery force-pushed the drop-python-39-support branch from 4b5f048 to 8f50bbd Compare October 2, 2025 11:53
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The new version of cyvcf2 is missing OSX ARM wheels for 3.13, I'll see if that is easy, or revert to conda.

@benjeffery benjeffery force-pushed the drop-python-39-support branch 2 times, most recently from ed94a8e to 99b75ba Compare October 9, 2025 11:21
@benjeffery benjeffery enabled auto-merge October 9, 2025 11:21
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cyvcf2 wheels now updated. But as usual Windows finds a way and is now segfaulting on Python 3.13.

@benjeffery benjeffery force-pushed the drop-python-39-support branch 3 times, most recently from c40bfdb to 6a99292 Compare October 9, 2025 12:20
- Update pyproject.toml requires-python to >=3.10
- Remove Python 3.9 classifier, add Python 3.13 classifier
- Update wheel building to use Python 3.10-3.13
- Update GitHub Actions tests to use Python 3.10 and 3.13
- Update CircleCI to use Python 3.10
- Update docker shared.env to include cp313 and exclude cp39
@benjeffery benjeffery force-pushed the drop-python-39-support branch from 6a99292 to 7c4d15c Compare October 9, 2025 13:46
@benjeffery benjeffery added this pull request to the merge queue Oct 9, 2025
Merged via the queue into tskit-dev:main with commit 4bf2521 Oct 9, 2025
11 of 12 checks passed
@benjeffery benjeffery deleted the drop-python-39-support branch October 9, 2025 16:24
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2 participants