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Ref seq high-level #1925

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5fb3502
WIP
benjeffery Nov 12, 2021
d7b522e
Ref seq as pointer
benjeffery Nov 16, 2021
f83cda8
WIP
benjeffery Nov 18, 2021
2c701b4
WIP
benjeffery Nov 19, 2021
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139 changes: 139 additions & 0 deletions c/tests/test_tables.c
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Original file line number Diff line number Diff line change
Expand Up @@ -324,6 +324,143 @@ test_table_collection_simplify_errors(void)
tsk_table_collection_free(&tables);
}

static void
test_table_collection_reference_sequence(void)
{
int ret;
tsk_table_collection_t tc1, tc2;

char example_data[100] = "An example string with unicode 🎄🌳🌴🌲🎋";
tsk_size_t example_data_length = (tsk_size_t) strlen(example_data);
char example_url[100] = "An example url with unicode 🎄🌳🌴🌲🎋";
tsk_size_t example_url_length = (tsk_size_t) strlen(example_url);
char example_metadata[100] = "An example metadata with unicode 🎄🌳🌴🌲🎋";
tsk_size_t example_metadata_length = (tsk_size_t) strlen(example_metadata);
char example_schema[100] = "An example schema with unicode 🎄🌳🌴🌲🎋";
tsk_size_t example_schema_length = (tsk_size_t) strlen(example_schema);

// Test equality
ret = tsk_table_collection_init(&tc1, 0);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_table_collection_init(&tc2, 0);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));

tc1.reference_sequence = tsk_malloc(sizeof(tsk_reference_sequence_t));
CU_ASSERT_NOT_EQUAL_FATAL(tc1.reference_sequence, NULL);
tsk_memset(tc1.reference_sequence, 0, sizeof(tsk_reference_sequence_t));

ret = tsk_reference_sequence_set_data(
tc1.reference_sequence, example_data, example_data_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_FALSE(tsk_table_collection_equals(&tc1, &tc2, 0));

tc2.reference_sequence = tsk_malloc(sizeof(tsk_reference_sequence_t));
CU_ASSERT_NOT_EQUAL_FATAL(tc2.reference_sequence, NULL);
tsk_memset(tc2.reference_sequence, 0, sizeof(tsk_reference_sequence_t));

ret = tsk_reference_sequence_set_data(
tc2.reference_sequence, example_data, example_data_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));

ret = tsk_reference_sequence_set_url(
tc1.reference_sequence, example_url, example_url_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_FALSE(tsk_table_collection_equals(&tc1, &tc2, 0));
ret = tsk_reference_sequence_set_url(
tc2.reference_sequence, example_url, example_url_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));

ret = tsk_reference_sequence_set_metadata(
tc1.reference_sequence, example_metadata, example_metadata_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_FALSE(tsk_table_collection_equals(&tc1, &tc2, 0));
ret = tsk_reference_sequence_set_metadata(
tc2.reference_sequence, example_metadata, example_metadata_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));

ret = tsk_reference_sequence_set_metadata_schema(
tc1.reference_sequence, example_schema, example_schema_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_FALSE(tsk_table_collection_equals(&tc1, &tc2, 0));
ret = tsk_reference_sequence_set_metadata_schema(
tc2.reference_sequence, example_schema, example_schema_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));

// Test copy
tsk_table_collection_free(&tc1);
tsk_table_collection_free(&tc2);
ret = tsk_table_collection_init(&tc1, 0);
CU_ASSERT_EQUAL_FATAL(ret, 0);

tc1.reference_sequence = tsk_malloc(sizeof(tsk_reference_sequence_t));
CU_ASSERT_NOT_EQUAL_FATAL(tc1.reference_sequence, NULL);
tsk_memset(tc1.reference_sequence, 0, sizeof(tsk_reference_sequence_t));

ret = tsk_reference_sequence_set_data(
tc1.reference_sequence, example_data, example_data_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_table_collection_copy(&tc1, &tc2, 0);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));

ret = tsk_reference_sequence_set_url(
tc1.reference_sequence, example_url, example_url_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_table_collection_copy(&tc1, &tc2, TSK_NO_INIT);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));

ret = tsk_reference_sequence_set_metadata(
tc1.reference_sequence, example_metadata, example_metadata_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_table_collection_copy(&tc1, &tc2, TSK_NO_INIT);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));

ret = tsk_reference_sequence_set_metadata_schema(
tc1.reference_sequence, example_schema, example_schema_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_table_collection_copy(&tc1, &tc2, TSK_NO_INIT);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));

// Test dump and load
tsk_table_collection_free(&tc1);
tsk_table_collection_free(&tc2);
ret = tsk_table_collection_init(&tc1, 0);
CU_ASSERT_EQUAL_FATAL(ret, 0);
tc1.sequence_length = 1.0;

tc1.reference_sequence = tsk_malloc(sizeof(tsk_reference_sequence_t));
CU_ASSERT_NOT_EQUAL_FATAL(tc1.reference_sequence, NULL);
tsk_memset(tc1.reference_sequence, 0, sizeof(tsk_reference_sequence_t));

ret = tsk_reference_sequence_set_data(
tc1.reference_sequence, example_data, example_data_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_reference_sequence_set_url(
tc1.reference_sequence, example_url, example_url_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_reference_sequence_set_metadata(
tc1.reference_sequence, example_metadata, example_metadata_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_reference_sequence_set_metadata_schema(
tc1.reference_sequence, example_schema, example_schema_length);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_table_collection_dump(&tc1, _tmp_file_name, 0);
CU_ASSERT_EQUAL_FATAL(ret, 0);
ret = tsk_table_collection_load(&tc2, _tmp_file_name, 0);
CU_ASSERT_EQUAL_FATAL(ret, 0);
CU_ASSERT_TRUE(tsk_table_collection_equals(&tc1, &tc2, 0));
tsk_table_collection_free(&tc1);
tsk_table_collection_free(&tc2);
}

static void
test_table_collection_metadata(void)
{
Expand Down Expand Up @@ -8794,6 +8931,8 @@ main(int argc, char **argv)
{ "test_table_collection_simplify_errors",
test_table_collection_simplify_errors },
{ "test_table_collection_time_units", test_table_collection_time_units },
{ "test_table_collection_reference_sequence",
test_table_collection_reference_sequence },
{ "test_table_collection_metadata", test_table_collection_metadata },
{ "test_simplify_tables_drops_indexes", test_simplify_tables_drops_indexes },
{ "test_simplify_empty_tables", test_simplify_empty_tables },
Expand Down
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