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User specified alleles #430

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Merged
merged 1 commit into from
Jan 10, 2020
Merged

User specified alleles #430

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3 changes: 3 additions & 0 deletions c/CHANGELOG.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,9 @@ In development.
of distinct alleles supported by 8 bit genotypes has therefore dropped
from 255 to 127, with a similar reduction for 16 bit genotypes.

- Change the ``tsk_vargen_init`` method to take an extra parameter ``alleles``.
To keep the current behaviour, set this parameter to NULL.

**New features**

- Add the ``TSK_KEEP_UNARY`` option to simplify (:user:`gtsambos`). See :issue:`1`
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2 changes: 1 addition & 1 deletion c/dev-tools/dev-cli.c
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Expand Up @@ -62,7 +62,7 @@ print_variants(tsk_treeseq_t *ts)
tsk_variant_t* var;

printf("variants (%d) \n", (int) tsk_treeseq_get_num_sites(ts));
ret = tsk_vargen_init(&vg, ts, NULL, 0, 0);
ret = tsk_vargen_init(&vg, ts, NULL, 0, NULL, 0);
if (ret != 0) {
fatal_library_error(ret, "tsk_vargen_alloc");
}
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