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v2.1.9

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@Robbie1977 Robbie1977 released this 25 Aug 04:39
· 414 commits to master since this release

What's New in This Release

  1. New VFBTerm and VFBTerms Objects:

    • Introduced vfb.term (a VFBTerm object) and vfb.terms (a list of VFBTerm objects), enabling lazy loading of data.
    • Full integration with image loading and display via Navis tools:
      • Display 3D plots: terms.plot3d()
      • Show thumbnails: term.show()
      • Open on Virtual Fly Brain (VFB) website: terms.open(), term.open()
      • Get a summary as a Pandas DataFrame: terms.get_summaries(), term.summary
  2. Enhanced Data Features:

    • Added subtypes and subparts, along with combined children parameters.
    • Introduced morphological similarity scores and potential driver results.
    • Added downstream_partners and upstream_partners attributes to VFBTerm.
  3. New Plotting and Visualization Options:

    • Draft functionality for plotting by type or connectivity.
    • Added include_template option for plots.
    • Merged thumbnail view available via VFBTerms.show().
  4. Logical Operations and Comparisons:

    • Added a full set of logical operations and comparison methods.
  5. New Query Capabilities:

    • scRNAseq queries.
    • transgene expression
    • lineage clone
    • lineage ref
  6. Minor Enhancements and Bug Fixes:

    • Direct cross-references (xrefs) can now be used to create term(s).
    • Various minor fixes and improvements.
    • More updates and enhancements to the documentation.

Full Changelog: v2.0.2...v2.1.9