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Installation on local computer

1. Download ArrayFire: https://arrayfire.com/binaries/

2. Install in R

if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools")

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")


devtools::install_github("daqana/rcpparrayfire")
devtools::install_github("waltno/viewmastR")

Installation on Linux (more relevant for Fred Hutch users)

1. ssh into rhino

2. Load modules and R environment in terminal

ml ArrayFire/3.8.1_Linux_x86_64_CUDA-11
ml R/4.2.0-foss-2021b

R

3. Download rcpparrayfire and viewmastR (same as above)

if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools")

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")


devtools::install_github("daqana/rcpparrayfire")
devtools::install_github("waltno/viewmastR")

4. Loading viewmaster in rstudio-server:

• Set up libraries / root directories as usual first

#version 11 cuda
dyn.load('/app/software/ArrayFire/3.8.1/lib64/libaf.so.3')
library(RcppArrayFire)
library(viewmastR)