Data Visualization

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Olivia Waltner edited this page Oct 26, 2022 · 7 revisions

pal_discrete() & pal_continuous: adapted from archR can use to overwrite default colors
theme_viewmastr() : makes the background transparent, gets rid of axes
you can access color palettes via viewmastrPal

DimPlot(seurat, group.by = "cell_type")+scale_color_manual(values = pal_discrete(set = "fallDay", values = levels(factor(seurat$cell_type))))+theme_viewmastr()

sfc() : returns beautiful rainbow colors that can be scrambled

DimPlot(seurat, group.by = "cell_type")+scale_color_manual(values = sfc(n=9, scramble = F))+theme_viewmastr()