Data Visualization

Jump to bottom

Olivia Waltner edited this page Oct 26, 2022 · 7 revisions

pal_discrete() & pal_continuous: adapted from archR can use to overwrite default colors

DimPlot(seurat, group.by = "cell_type")+scale_color_manual(values = pal_discrete(set = "fallDay", values = levels(factor(seurat$cell_type))))

sfc() : returns beautiful rainbow colors that can be scrambled

DimPlot(seurat, group.by = "cell_type")+scale_color_manual(values = sfc(n=9, scramble = F))

viewmastr_theme() : makes the background transparent

DimPlot(seurat, group.by = "cell_type")+scale_color_manual(values = sfc(n=9, scramble = F))+viewmastr_theme()