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Helper Functions
Olivia Waltner edited this page Oct 26, 2022
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- humanize() : takes a mouse data set and converts the gene short names to human gene short names
human_seurat <- humanize(mouse_object)
- monocle3_to_seurat() : takes a monocle3 (cds) object and converts to a seurat object
seurat_object <- monocle3_to_seurat(monocle3_object)
- seurat_to_monocle3() : takes a seurat object and converts to a monocle3 (cds) object, you can specify assay name and preferred reduction
monocle_object <- seurat_to_monocle3(seurat_object, assay = "RNA", seu_rd = "umap")