scMAGeCK 0.99.0

Seurat 5 compatibility and Bioconductor submission-readiness.

Highlights

• Full Seurat v5 / SeuratObject >= 5 compatibility.
  • Objects are updated with UpdateSeuratObject() on read (no more no slot of name "images").
  • Migrated the defunct slot= argument of GetAssayData()/FetchData() to layer= (defunct in SeuratObject >= 5.4).
  • The bundled example object is stored in the Seurat v5 format.
• DESCRIPTION now requires Seurat (>= 5.0.0).
• Compiled code routes diagnostics to the R console via Rcpp::Rcout/Rcpp::Rcerr/Rprintf; hardened file I/O (early-return on open failure) and removed an interactive scanf seed prompt.
• R CMD check clean (0 error / 0 warning / 0 note on Linux); package reset to 0.99.0 for Bioconductor resubmission.

Install

devtools::install_github("weili-lab/scMAGeCK")

Requires Seurat >= 5.

Fixes #6.

Pre-release version v0.2

This is a pre-release version

Pre-release version

This is a pre-release version.