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scMAGeCK 0.99.0

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@davidliwei davidliwei released this 09 Jul 19:42
v0.99.0
3b62b49
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Learn about vigilant mode.

Seurat 5 compatibility and Bioconductor submission-readiness.

Highlights

  • Full Seurat v5 / SeuratObject >= 5 compatibility.
    • Objects are updated with UpdateSeuratObject() on read (no more no slot of name "images").
    • Migrated the defunct slot= argument of GetAssayData()/FetchData() to layer= (defunct in SeuratObject >= 5.4).
    • The bundled example object is stored in the Seurat v5 format.
  • DESCRIPTION now requires Seurat (>= 5.0.0).
  • Compiled code routes diagnostics to the R console via Rcpp::Rcout/Rcpp::Rcerr/Rprintf; hardened file I/O (early-return on open failure) and removed an interactive scanf seed prompt.
  • R CMD check clean (0 error / 0 warning / 0 note on Linux); package reset to 0.99.0 for Bioconductor resubmission.

Install

devtools::install_github("weili-lab/scMAGeCK")

Requires Seurat >= 5.

Fixes #6.

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