Meeting 09 26 2018

Status

• Demo 1 (preprocessing): completed by Yuncong as of Monday. Alex is learning GUIs, halfway through running/documenting.

  • The GUI can run on Ubuntu machines (Testing on Atlas Machine)

• Demo 2,3,4: Finished, tested by Alex on 2 sections of other brain

Plan for Next Week

• Complete testing Demo 1 (preprocessing)

• Complete full pipeline on a full brain

Organize Github Repository

Inside the src. folder:

• 3d/
  • Only contains notebooks. Remove redundancies
• annotation/
• gui/
• learning/
• preprocess/
• preprocess_AN/
  • Remove
• reconstruct/
• registration/
• utilities/

• Add to setup/setup.sh a commend to add the directories with the scripts to the PATH variable
• Move scripts from demo directory to the appropriate subdirectory of src
• Organize the json files in demo.