Meeting 10 10 2018

Plan

• Figure out with yuncong what are all of the GUIs. Preprocessing/annotation/ ?
• Mask generation: what happens if we skip the correction of the clip mask and use it as is?
• Defining the boundary of the brain as a set of strcutures.

In progress

• Processing the new brain

Deadlines:

• Prepare the annotation before Dimitri's visit. (19/10)

Coming up

• new brains from Partha
• Slicer code - add interface to move cut plane.
  • Distribute using Docker.
• Using AWS credit:
  • Copy brains to s3
  • Run shape analysis (Yoav)
  • Using EC2 instead of local workstations.