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scpca-nf v0.10.0

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@sjspielman sjspielman released this 07 Apr 15:04
· 60 commits to main since this release
v0.10.0
ccb3970
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What's Changed

  • Updated spatial transcriptomics processing to use Space Ranger v4. The supported Visium technologies now include the following:
    • First-generation Visium
    • Visium CytAssist
    • Visium HD and Visium HD 3'
  • Added support for additional Visium Flex Gene Expression probe set versions
  • Updated Cell Browser output to display normalized expression values instead of raw counts
  • Addressed a small error in reference building
  • Use scpcaTools v0.4.5, which contains minor R version and infrastructure updates
  • Infrastructure updates:
    • Cell Ranger and Space Ranger Docker containers used by scpca-nf are now hosted in this repository
    • Added pull-through cache support for Docker containers
  • Initiated scpca-nf object formatting checks and updated internal metrics report

Full Changelog: v0.9.3...v0.10.0

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