Release v0.2.4

The pipeline now outputs:

1. A file called scaled_counts_from_kallisto.tsv which is a human-friendly wide format file that contains tab-separated scaled count values.
2. One folder named kallisto that contains the bootstrap values per sample and that can be used in Sleuth analysis.

scaled_counts_from_kallisto.tsv output format:

target_id	sample_01	sample_02	sample_03	sample_04	sample_05	sample_06	sample_07	sample_08
Solyc00g500063.1.1	51.7927335	56.4328456	49.1641227	9.1853026	14.9911621	13.5312404	12.5865526	10.3017012
Solyc00g500130.1.1	11.645641	12.0185262	13.0505986	3.96762667	2.75468946	5.74127494	5.17062419	4.25383049
Solyc00g500196.1.1	86.0507174	100.14843	99.9141849	31.0003963	23.0633263	21.8168448	17.1634808	21.7480359
Solyc00g500200.1.1	11.645641	12.0185262	13.0505986	3.96762667	2.75468946	5.74127494	5.17062419	4.25383049

Add a Docker image to run the pipeline

A custom Docker image was created to run the pipeline. Instructions were also updated in the README file.

https://hub.docker.com/r/bleekerlab/rnaseq-analysis-kallisto-sleuth/tags

Compute scaled count estimates

v0.2.2

This release computes the scaled counts of the provided samples using…

Version 0.2.0

This pre-release computes the scaled counts based on Kallisto pseudo-alignments.
Some small changes need to be implemented before this is an actual functional release (differential expression, etc.).