v0.101.3

Oceananigans v0.101.3

Diff since v0.101.2

Merged pull requests:

• Make nodes() return the correct indices when passed a view of a Field (#4814) (@tomchor)
• Refactor the buffer system and add methods for synchronize_communication! (#4939) (@simone-silvestri)
• Three dimensional column_depth methods (#4940) (@simone-silvestri)
• Refactor SplitExplicitFreeSurface to compute transport barotropic velocities (#4941) (@simone-silvestri)
• Remove redundant FT definition in fields tests (#4942) (@giordano)
• Remove integrated areas in ImplicitFreeSurface and refactor solver (#4943) (@simone-silvestri)
• Properly set status for computed fields (#4945) (@erin-atkinson)
• Add AGENTS.md for agent-assisted coding (#4946) (@glwagner)
• Fix bug in multi-region SplitExplicitFreeSurface (#4947) (@simone-silvestri)
• Add DJ4Earth paper (#4950) (@navidcy)
• Run benchmarks on julia 1.12 (#4951) (@simone-silvestri)
• Remove unused cubed spheres module (#4953) (@simone-silvestri)
• Fix formatting and punctuation in references (#4955) (@navidcy)
• Fix typo in grids doc (#4956) (@awiteck)
• Add "it" to operations doc for clarity (#4957) (@awiteck)
• Remove duplicate citation for DJ4Earth paper (#4959) (@navidcy)
• Update MakieExt for Makie v0.24 + add tests (#4960) (@navidcy)

Closed issues:

• nodes() returns the full grid when given a smaller view of a Field (#4729)
• compute!(field, time) doesn't update status of field (#4944)
• [doc] Add README-zh-CN.md (#4948)