1.1.1

This release removes any explicit mentions of conda from the snakemake code. Dependency managements previously happened under the hood during the first run of foldtree. Now it happens during installation time in the environment where mamba install foldtree is run. Previously used folder ~/.foldtree is no longer created or used.

1.1.1rc1

Pre-release for delegating dependency management to the bioconda package.

1.1.0

This release contains a refactor of v1.0.0. Most importantly, it introduces a script foldtree to run the pipeline like a black box, and makes it installable. Colab notebook, project structure, and documentation are updated.

This release includes:

1.1.0rc2

• Added --conda-prefix and made snakemake envs to go to ~/.foldtree by default. This prevents snakemake creating the same environment again and again if run in different folders.

1.1.0rc1

• Added a python wrapper for the main snakemake workflow
• Restructured the project to make it installable
• Split and minimized conda dependencies

1.1.0rc2

Added --conda-prefix and made snakemake envs to go to ~/.foldtree by default. This prevents snakemake creating the same environment again and again if run in different folders.

1.1.0rc1

This is a draft release, not a complete release.

• Added a python wrapper for the main snakemake workflow
• Restructured the project to make it installable
• Split and minimized conda dependencies

1.0.0

Initial public release of Foldtree, corresponding to the state at the publication time of the paper.