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Gsb057/README.md

Hi, I'm Sathyabharathi

Final-year Industrial Biotechnology student, building toward graduate studies in bioinformatics and computational biology.

I'm currently focused on applying machine learning to genomics problems — working with RNA-seq expression data, differential expression analysis, and classification models trained on public cancer datasets like TCGA and GEO.

Currently working on:

  • breast-cancer-subtype-classifier — an ML pipeline classifying breast cancer PAM50 subtypes from RNA-seq data, with independent external validation on a second public cohort
  • Relearning and strengthening core Python/bioinformatics fundamentals through small applied projects (see Mini-projects and bio-pipe)

Background: B.Tech Industrial Biotechnology, Anna University (Alagappa College of Technology, Chennai) — graduating 2027.

Reach me at sathyabharathi7711@gmail.com

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  1. breast-cancer-subtype-classifier breast-cancer-subtype-classifier Public

    Machine learning pipeline classifying breast cancer PAM50 subtypes (Luminal A vs. Basal-like) from TCGA RNA-seq data. Includes limma differential expression analysis, comparison of 4 classifiers, a…

    Python

  2. bio-pipe bio-pipe Public

    A command-line bioinformatics pipeline for DNA sequence processing. Supports cleaning, analysis, reverse complementing, and translation via a composable --steps flag, so users can chain any combina…

    Python

  3. Mini-projects Mini-projects Public

    Trying to relearn python and other stuff after long break.

    Python