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Set up folders
Haotian edited this page Dec 9, 2025
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Developer: Developer's team
Scripts status: Ready
Prerequisite scripts: None
Data upload method: None
Issue report to: Haotian Tang haotian.tang@bristol.ac.uk
We have created a script that will generate folders for each module. It also makes the bash scripts executable.
It will generate folders for:
- processed_data
- results
- logfiles
- job_reports
- hase data
To run:
./00-setup_folders.sh -c /path/to/config/file
This will be very quick to run.
- Home
- Frequently Asked Questions
- Participation requirements
- Submit an issue or start a discussion
- System requirements and pipeline installation
0. Set up folders
1a. Check data
1b. Process genetic data
1c. Check methylation and phenotypes
1d. mQTL control GWAS
1e. GWAS of genetic PCs
1f. Cross-cohort normalisation of methylation data
1g. Compute haplotype components
1 upload. Upload to Bristol SFTP
2a. Relatedness assessment/removal
2b. Regular and variance EWAS
3a. Run meQTL analysis
3b. Run variance meQTL analysis