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Submitting an issue
Thank you for helping improve our project! Before you submit an issue, please take a moment to review these guidelines to ensure your issue is addressed effectively.
Search Existing Issues: Before submitting a new issue, please search the existing issues (including closed issues) to see if your problem has already been reported. This helps avoid duplicates and allows us to focus on a single thread of discussion for each issue.
Use Clear and Descriptive Titles: Provide a concise summary of the issue in the title. This helps others understand and search for similar issues.
Provide Detailed Information:
For Bugs: Specify which script you were running when the error occured, the expected result, and the actual result. Provide any relevant logs or screenshots.
For Documentation: Specify the page & section where the documentation was misleading or confusing.
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- Participation requirements
- Submit an issue or start a discussion
- System requirements and pipeline installation
0. Set up folders
1a. Check data
1b. Process genetic data
1c. Check methylation and phenotypes
1d. mQTL control GWAS
1e. GWAS of genetic PCs
1f. Cross-cohort normalisation of methylation data
1g. Compute haplotype components
1 upload. Upload to Bristol SFTP
2a. Relatedness assessment/removal
2b. Regular and variance EWAS
3a. Run meQTL analysis
3b. Run variance meQTL analysis