Ideally you contribute results for all chromosomes. However we recognise that for some cohorts this is not always possible.
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0. Set up folders 1a. Check data 1b. Process genetic data 1c. Check methylation and phenotypes 1d. mQTL control GWAS 1e. GWAS of genetic PCs 1f. Cross-cohort normalisation of methylation data 1g. Compute haplotype components 1 upload. Upload to Bristol SFTP
2a. Relatedness assessment/removal 2b. Regular and variance EWAS 3a. Run meQTL analysis 3b. Run variance meQTL analysis
Instructions for developers