Onboarding checklist

Setting up new lab members

• Make sure the keycard works for the building and share the lab access code.
• add to slack
• add to hyak
• add to github
• set up ssh to hyak. We recommended following both these links:
  • https://hyak.uw.edu/docs/setup/ssh/
  • https://github.com/StergachisLab/Miscellaneous_lab_wiki/wiki/Mitchells-shell-tips#ssh-tips
• Share a lab wiki link: https://github.com/StergachisLab/Miscellaneous_lab_wiki/wiki
• Add the following lines to your ~/.bashrc on hyak:

export PATH=$PATH:/mmfs1/gscratch/stergachislab/bin
export SNAKEMAKE_CONDA_PREFIX=/mmfs1/gscratch/stergachislab/snakemake-conda-envs
export APPTAINER_CACHEDIR=/mmfs1/gscratch/stergachislab/snakemake-conda-envs/${USER}-apptainer-cache
mkdir -p $APPTAINER_CACHEDIR

• Future proof your hyak home directory from size limitations:
  • https://github.com/StergachisLab/Miscellaneous_lab_wiki/wiki/Dealing-with-the-home-directory-size-limitations

Optional steps and/or review items

• List of shell tips
  • https://github.com/StergachisLab/Miscellaneous_lab_wiki/wiki/Mitchells-shell-tips