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…screwed up the commit history of the last one.
…ng to work and need a night to think on it
…nterface with testpool and resultrank
… Will modify later. Tests run all the way through.
…them to interact nicely. some work on resultpool, too
* first go around * minor corrections * remove coverageReport
* [NET-142] Paired-T Edge Level Test (#47) * first go around * minor corrections * [NET-202] Scale fix for MatrixPlot (#49) * fix copy/immutable issue of property * fixes for scaling and colors * add default button * fix some silly mistakes in plot selection * Exported mlapp files --------- Co-authored-by: Github Action <action@github.com>
* moved diagnostic plots to there own class * fixed up gui * [NET-193] - Integrate Winkler Method and Westfall-Young method into NLA (#38) * fixed network test result and NLA_GUI and NLAResult for new rankings * Exported mlapp files * fixing up result rank and network test result to add new rankings * Exported mlapp files --------- Co-authored-by: Github Action <action@github.com> * [NET-193] Fix for ResultRank tests (#40) * fix for result rank tests * finally found all errors * another test fix * [NET-193] Fix denominator calc (#41) fix error in denominator calculation * [NET-196] Fix Cohen's D test not running (#43) fix cohensd * [NET-197] Fix Winkler math (#45) fixed winkler error and westfall_young storage * removed diagnostic plots * changed size of some figures * start of large plot wrapper * trying to figure out where to go * add button object to input fields * doing better on drawing options * finally got buttons in correct spots * adding in the trimatrix options * trying to add colorbar choice * trying to get the colormap choice. this is a rough, but there's improvements still * able to get changes and sort them into the correct function to use * semicolon * fixing some errors found * getting matrix plot attached * data showing up in trimatrix * scaling and colorbar work correctly * fixed checkbox error * fix cohend test * fix winkler math * chord plotting seems to be working. no guarantees * starting to add convergence * convergence plot * finally figured out cohen's d issues * changes to background colors * adding title to single plot * starting to integrate single plot. * adding chord plotting and cohens d filter to networktestplot * trying to streamline chords * edge chord plotting with selector appears to function * Things are starting to work well, except that the options panel is too short * fixed options panel size and p-max threshold * [NET-214] Error plotting Chi-squared and Hypergeometric within network pair (#58) added check for tests without single sample * added in one plot and wired it up * changes to networktestresult to eliminate lots of code, result rank to fix issues * Exported mlapp files * fixes to diagnostic plots * Exported mlapp files * Exported mlapp files --------- Co-authored-by: Github Action <action@github.com>
* [NET-214] Error plotting Chi-squared and Hypergeometric within network pair (#58) added check for tests without single sample * [NET-216] Make `commitString.m` shell agnostic (#62) make sprintf one line * remove sorts from result rank * fixed an error in merging stats and probabilities. removed sort in eggebrecht ranking * result rank is a mess and I'm still not sure it's correct * rename directory...again * added ability for hypergeo to use p-value as a stat. also fixed summing method for p-value calc * added the 1 - to get the p-value using p-values of tests correct
* moved diagnostic plots to there own class * moved diagnostic plots to there own class * delete some unneeded files. Update diagnostic plotting * remove unneeded files * Exported mlapp files --------- Co-authored-by: Github Action <action@github.com>
* rename a few enums Add some new enums change a lot of strings to enum choices * Exported mlapp files --------- Co-authored-by: Github Action <action@github.com>
* rename p-values to be more consistent. create only needed results in each method * changed names to better names, created static method * lots of changes. delete two sample no-permutations after ranking function to get p-value names renaming in tests and plotting.
Got a little too excited switching things over enums. forgot which ones work where.
added conditional for pmax is zero. clear out obj.title to fix repeating
* Fix up the whole testpool testing. I have no clue how it was even working before. Really, need to get my head checked * result rank changes soon to be merged in, and corresponding test results for unittests * tests all work. need to compare to make sure calc is correct * Fix up the whole testpool testing. I have no clue how it was even working before. Really, need to get my head checked * result rank changes soon to be merged in, and corresponding test results for unittests * rename directory...again * tests all work. need to compare to make sure calc is correct * fixing unit test results and result rank and hypergeometric * edge permutation tests all work * testpool tests all fixed * result rank tests fixed * fixed rest of network test results tests
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