median and summary file
- this release adds a new
*.mosdepth.summary.txtoutput file added by @danielecook. It reports some statistics for each chromosome. - it also adds a
--medianflag to be applied to the regions given in--by. The default is to use mean. This mode is recommended for more stable estimate of depth. - fix for #54 for quantize.
To get started, use:
wget https://github.com/brentp/mosdepth/releases/download/v0.2.6/mosdepth && chmod +x ./mosdepth && ./mosdepth -h
That is the (recommended) static binary. To use one that depends on your local htslib (libhts.so), download this binary