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@Remi-Gau Remi-Gau commented Apr 4, 2021

breaking change

  • subject level GLM names and structure has been changed

new features

  • possibility to run anat workflow only
  • add tools to deal with ROIs (CPP_ROI and marsbar)
  • add workflows for ALI toolbox (lesion detection)
  • add slice display with "dual coding" (beta and t values shown on the same slice)
  • add possibility to create specify name of GLM directory
  • GLM analysis can now be run in a entirely separate dataset structure independent of the preprocessed data

minor changes

  • improve initialization
  • simplify test suite
  • save a "label tsv" when creating 4D volume from GLM output to use for MVPA (to be merged)
  • make name of GLM output file more BIDS like

release protocol

  • create a dedicated branch for the release candidate from dev
  • update version.txt
  • add PR with INFRA (test, CI...)
  • fix any remaining failing CI (test, markdown and code listing)
  • ensure the doc is up to date
  • make sure the doc builds correctly and fix any error
  • update jupyter books and binder
  • update changelog
  • merge to master
  • create a tagged release
  • update and downstream repo (for example any template repo that use this repo as a submodule)

Remi-Gau and others added 30 commits March 6, 2021 18:20
[ENH] add possibility to skip subject GLM QA
remove specific sourceMRI code which is not in common between the two repos
Change path

Co-authored-by: Remi Gau <remi_gau@hotmail.com>
- refactor
- rename test functions
- lint
- add copyright
[ENH] drop "CPP style" group support
[ENH] options are saved in a cfg folder in the working directory
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codecov bot commented Apr 4, 2021

Codecov Report

Merging #341 (542a381) into master (8314dc4) will decrease coverage by 1.28%.
The diff coverage is 38.29%.

❗ Current head 542a381 differs from pull request most recent head 4f139c4. Consider uploading reports for the commit 4f139c4 to get more accurate results
Impacted file tree graph

@@            Coverage Diff             @@
##           master     #341      +/-   ##
==========================================
- Coverage   62.66%   61.37%   -1.29%     
==========================================
  Files         108      114       +6     
  Lines        1714     1833     +119     
==========================================
+ Hits         1074     1125      +51     
- Misses        640      708      +68     
Impacted Files Coverage Δ
src/QA/anatomicalQA.m 0.00% <0.00%> (ø)
src/QA/functionalQA.m 0.00% <0.00%> (ø)
src/batches/setBatch3Dto4D.m 100.00% <ø> (ø)
src/batches/setBatchComputeVDM.m 71.42% <ø> (ø)
src/batches/setBatchContrasts.m 100.00% <ø> (ø)
src/batches/setBatchCoregistration.m 0.00% <ø> (ø)
src/batches/setBatchCoregistrationFmap.m 0.00% <0.00%> (ø)
src/batches/setBatchCreateVDMs.m 0.00% <ø> (ø)
src/batches/setBatchEstimateModel.m 0.00% <0.00%> (ø)
src/batches/setBatchGroupLevelContrasts.m 0.00% <ø> (ø)
... and 116 more

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@Remi-Gau Remi-Gau changed the title [REL] Release 0.3.0 [REL] Release 1.0.0 Apr 7, 2021
@Remi-Gau Remi-Gau merged commit 826c531 into master Apr 13, 2021
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5 participants