Executable BioRuby documents

What we hacked

• We created a CI workflow for BioRuby documentation. https://docs.google.com/presentation/d/1mKKzD8erZc5Qbrbr1CDck76PGy8ZJecshmsqkRPMmUc/edit?usp=sharing
• This workflow is automated and the Ruby code result is reproducible.

The workflow process

• Once the github repo is updated, Travis CI pull the document and runs rubydown.
• rubydown is pure-Ruby R Markdown clone. rubydown runs Ruby code chunks in the Markdown, and generates HTML.
• Next Travis CI upload the HTML to surge.sh. Surge.sh is static web publishing service.

• https://github.com/sciruby-jp/rubydown
• https://github.com/bioruby/documents
• https://bioruby.surge.sh