Proteomics group

Category: Omics Lead: Susumu Goto Members: Susumu Goto, Yuki Moriya, Shin Kawano, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Yu Watanabe, Tomoyo Takami, Satoshi Tanaka, Masaki Murase

Proteogenomics analysis protocol, data structure, viewer.

Analysis protocol

Human cell line data

Reference protein (peptide) database construction.

1. SWISS-PROT database with all variations. -> Replace with UniProt?
2. Human lung cancer cell line data: Create protein sequence data from KERO vcf and Ensembl.
3. Merge 1 & 2.
4. Create peptide sequence data using several cleavage enzymes: trypsin, trypsin-p, ...

Data structure:

Viewer Links to KERO / ChIP-Atlas?