Proteomics group

Category: Omics Lead: Susumu Goto Members: Susumu Goto, Yuki Moriya, Shin Kawano, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Yu Watanabe, Tomoyo Takami, Satoshi Tanaka, Masaki Murase

Proteogenomics analysis protocol, data structure, viewer.

Analysis protocol:

Human cell line data.

• Reference protein database construction.
• SWISS-PROT database with all variations. -> Replace with UniProt?
• Human lung cancer cell line data: Create protein sequence data from KERO vcf and Ensembl.

Reference amino acid database construction.

Data structure:

Viewer Links to KERO / ChIP-Atlas?