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Robert Hoehndorf edited this page Dec 14, 2018 · 3 revisions

Example SPARQL queries:

Find the 10 functionally most similar proteins to A4 (human):

PREFIX up:<http://purl.uniprot.org/core/> 
PREFIX taxon:<http://purl.uniprot.org/taxonomy/> 
PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#> 
PREFIX b2v: <http://bio2vec.net/function#>
PREFIX b2vd: <http://bio2vec.net/dataset#>
PREFIX keywords:<http://purl.uniprot.org/keywords/> 

SELECT ?protein ?simprotein ?val ?x ?y
WHERE
{ 
	?protein a up:Protein . 
	?protein up:mnemonic 'A4_HUMAN'
    SERVICE <http://test.bio2vec.net/ds/query> {
	  (?simprotein ?val ?x ?y) b2v:mostSimilar(b2vd:dataset_2 ?protein 10) .
    } 
}

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